Publications about MIMSUP

Bingham, B.L. (2005). Opportunities in marine science. Winds of Change Magazine . 20: 12-16. [pdf]

Bingham, B.L., S.D Sulkin, S.S. Strom, G. Muller-Parker (2003). Increasing diversity in the marine sciences through the Minorities in Marine Science Undergraduate Program. J Geosc. Ed. 51: 474-480. [pdf]

Publications by MIMSUP alumni

Adams, D.K., Arellano, S.M. and B. Govenar (2012). Larval exchange: vent life in the water column. Oceanography 25: 256-268.

Aguilar, N.M., Ishimatsu, A., Ogawa, K. and Khoo, K.H. (2000). Aerial ventilatory responses of the mudskipper, Periophthalmodon schlosseri, to altered aerial and aquatic respiratory gas concentrations. Comp. Biochem. Physiol. 12: 285-292.

Aguilar-Roca, N.M., A. Willimas, R. Warrior and D.K. O’Dowd (2009). Two minute training in class significantly increases the use of professional formatting in student to faculty e-mail correspondence. Int. J. Scholar. Teach. Learn. 3: online.

Aguilar-Roca, N.M., A. Williams and D.K. O’Dowd (2010). The impact of laptop-free zones on student attitudes and performance. Comp. & Ed. 59: 1300-1308.

Arellano, S. and D.G. Fautin (2001). Redescription and range extension of the sea anemone Exocoelactis actinostoloides (Wassilief, 1908) with revision of genus Exocoelactis (Cnidaria, Anthozoa, Actiniaria). Zoosystema 23(4): 645-657

Arellano, S.M. and C.M. Young (2009). Spawning, development and the duration of larval life in a deep-sea cold-seep mussel. Biol. Bull. 216: 149-162.

Arellano, S.M. and C.M. Young. (2010). Pre- and Post-settlement effects on the fine-scale spatial distribution of a cold-seep mussel. Mar. Ecol. Prog. Ser. 414: 131-144.

Arellano, S.M. and C.M. Young. (2011). Temperature and salinity tolerances of embryos and larvae of the deep-sea mytilid mussel "Bathymodiolus" childressi. Mar. Biol. DOI 10.1007/ s00227F011F1749F9.

Arellano, S.M., A.M. Reitzel, C. Button (2012). Variation in vertical distribution of sand dollar larvae relative to haloclines, food and fish cues. J. Exp. Mar. Biol. Ecol. 414: 28-37.

Arellano, S.M., O.O. Lee, F.F. Lafi, J. Yang, Y. Want, C.M. Young and P.Y. Qian (2012). Deep sequencing of Myxilla(Ectyomyxilla) methanophila, an epibiotic sponge on cold-seep tubeworms, reveals methylotrophic, thiotrophic, and putative hydrocarbon-degrading microbial associations. Microb. Ecol. doi: 10.1007/s00248-0012-0130-y.

Augustine, L. and G. Muller-Parker (1998). Selective predation by the mosshead sculpin Clinocottus globiceps on the sea anemone Anthopleura elegantissima and its two algal symbionts. Limnol. Oceanogr. 43: 711-715.

Behrens Yamada, S., B. Baldwin and H. Metcalf (1992). Predation by the cancer crab, Cancer oregonensis inside oyster trays. J. Shellfish Res. 12: 16-21.

Behrens Yamada, S., S.A. Navarrete and C.A. Needham (1997). Predation induced changes in behavior and growth rate in three populations of the intertidal snail, Littorina sitkana (Philippi). J. Exp. Mar. Biol. Ecol. 220: 213-226.

Bingham, B.L., J. Burr and H. Wounded Head (2000). Causes and consequences of arm damage in the seastar Leptasterias hexactis. Can. J. Zool. 78:596-605.

Bingham, B.L., I. Freytes, M. Emery, J. Dimond and G. Muller-Parker (2011). Aerial exposure and body temperature of the intertidal sea anemone Anthopleura elegantissima. Invert. Biol.

Bingham, B.L., K. Giles and W.B. Jaeckle (2004). Variability in broods of the seastar Leptasterias aequalis. Can. J. Zool. 82: 457-463.

Blinkova, O., K. Rosario, L. Li, A. Kapoor, B. Slikas, F. Bernardin, M. Breitbart and E. Delwart (2009). Frequent detection of highly diverse cardioviruses, cosaviruses, bocaviruses and circoviruses in US sewage. J. Clin. Micro. 47: 3507-3513

Bracken, M.E.S., C.A. Gonzalez-Dorantes and J.J. Stachowicz (2007). Whole-community mutualism: associated invertebrates facilitate a dominant habitat-forming seaweed. Ecology 88: 2211-2219.

Bracken, M.E.S., S.E. Friberg, C.A. Gonzalez-Dorantes, and S.L. Williams (2008). Functional consequences of realistic biodiversity changes in a marine ecosystem. Proc. Nat. Acad. Sci., 105: 924-928.

Britton-Simmons, K.H., S. Wyllie-Echeverria, E.K. Day, K.P. Booth, K. Cartwright, S. Flores, C.C. Garcia, T.L. Higgins, C. Montanez, A. Rames, K.M. Welch, and V. Wyllie-Echeverria (2010). Distribution and performance of the non-native seagrass Zostera japonica across a tidal height gradient on Shaw Island, WA, USA. Pac. Sci. 64: 187-198.

Chen, ZF, K Matsumura, H Wang, SM Arellano, X Yan, I Alam, JAC Archer, VB Bajic, PY Qian (2011). Toward an understanding of the molecular mechanisms of barnacle larval settlement: A comparative transcriptomic approach. PLoS One 6: e22913

Cheng, W., L.O. Hall, D. B. Goldgov, I. Soto and C. Hu (2009). Automatic red tide detection from MODIS satellite images. Proc. 2009 IEEE Int. Conf. Systems, Man and Cybernetics. Pp. 1864 - 1868.

Chimner, R. A., Fry, B., Kaneshiro, M.Y. and Cormier, N. (2006). Current extent and historical expansion of introduced mangroves on O`ahu, Hawai`i. Pac. Sci. 60: 377-383.

Crim R.N., Sunday J.M., Harley C.D.G. (in press). Elevated CO2 impairs larval development and survival of an endangered mollusk, Haliotis kamtschatkana. J. Exp Mar. Biol. Ecol.

Chun, K., M.J. Weaver and L.A. Deegan (1996). Assessment of fish communities of New England embayments: application to the Estuarine Biotic Integrity Index. Biol. Bull. 191: 320.

De Robertis, C.H. Ryer, A. Veloza and R.D. Brodeur (2003). Differential effects of turbidity on prey consumption of piscivorous and planktivorous fish. Can. J. Aquat. Sci. 60: 1517-1526.

Dhawan J, H. Deng, S.J. Gatley, A. Makriyannis, T. Akinfeleye, M. Bruneus, A.A. Dimaio and A.N. Gifford (2006). Evaluation of the in vivo receptor occupancy for the behavioral effects of cannabinoids using a radiolabeled cannabinoid receptor agonist, R-[(125/131)I]AM2233. Synapse 60: 93-101.

Diederich, C.M., J.N. Jarrett, O.R. Chaparro, C.J. Segura, S.M. Arellano, and J.A. Pechenik (2011). The effects of short-term salinity stress on pre- and post-metamorphic growth, survival, and development in three calyptraeid gastropods. J. Exp. Mar. Biol. Ecol. 397: 94-105

Donovan, D.A., B.L. Bingham, H.M. Farren, R. Gallardo and V.L. Vigilant (2002). Effects of sponge encrustation on the swimming behavior, energetics and morphometry of the scallop Chlamys hastata. J. Mar. Biol. Assoc. UK 82: 469-476.

Epifanio, C.E., Cope, J.S., Rowe, P.M., and F. Jenkins (1991). Comparison of rates of development of Atlantic Mud Crab larvae in the laboratory and in field-deployed enclosures. J. Crust. Biol. 11: 540-545.

Franke, J.D., Boury, A.L., Gerald, N.J. and Kiehart, D.P. (In press). Analysis of native nonmuscle myosin-II stability and light chain binding in Drosophila melanogaster. Cell Motil. Cytoskel.)

Fredrickson, K.A., S.L. Strom, R.N. Crim and K. Coyne (in press). Interstrain variability in physiology and genetics of Heterosigma akashiwo (Raphidophycaea) from the west coast of North America. J. Phycol.

Garcia, R., S. Sulkin and M. Lopez (2011). Effects on larval crabs of exposure to algal toxin via ingestion of heterotrophic prey. Mar. Biol. 158: 451-460.

García-Rios C., Soto-Santiago, F.J., Colón-Rivera, R.J. and J.R. Medina- Hernández (2008). Gasterópodos asociados al alga calcárea Halimeda opuntia (Udoteaceae) en Puerto Rico. Rev. Biol. Trop. 56: 1665-1675.

Gerald, N.J., Siano, M., and De Lozanne, A. (2002). The Dictyostelium LvsA protein is localized on the contractile vacuole and is required for osmoregulation. Traffic 3:50-60.

Gerald, N., J. Dai, H.P. Ting-Beall and A. De Lozanne (1998). A role for Dictyostelium RacE in cortical tension and cleavage furrow progression. J. Cell Biol. 141: 483-492.

Gerald, N.J., C.K. Damer, T.J. O'Halloran and A. De Lozanne (2001). Cytokinesis failure in clathrin-minus cells is caused by cleavage furrow instability. Cell Motil. Cytoskeleton 48: 213-23.

Gerald, N.J., Coppens, I., and Dwyer, D.M. (2007). Molecular dissection and expression of the LdK39 kinesin in the human pathogen, Leishmania donovani. Molec. Microb. 63: 962-979.

Gerald N.J., I. Coppens, D.M. Dwyer (2008). Molecular characterization and expression of a novel kinesin which localizes with the kinetoplast in the human pathogen, Leishmania donovani. Cell Motil Cytoskel. 65: 269-80.

Gerald N.J. , B. Mahajan and S. Kumar (2011). Mitosis in the human malaria parasite Plasmodium falciparum. Eukar. Cell 10: 474-482.

Gerald N.J. , V. Mahajan, B. Mahajan, Y. Kozakai and S. Kumar (2011). Protection from experimental cerebral malaria with a single dose of radiation-attenuated, blood-stage Plasmodium berghei parasites. PLoS ONE (in press).

Gibson, B.A. and N. Puniwai (2006). Developing an archetype for integrating native Hawaiian traditional knowledge with earth system science education. J. Geosci. Ed. 54:287-294.

Gifford A.N., Bruneus, M., Gatley, S.J., Lan,R., Makriyannis, A.and N.D. Volkow (1999). Potentiation of the action of anandamide on hippocampal slices by the fatty acid amide hydrolase inhibitor, palmitylsulphonyl fluoride (AM 374). Eur. J. Pharmacol. 383:9-14.

Gifford A.N., Bruneus, M., Gatley, S.J., Lan,R., Makriyannis, A.and N.D. Volkow,N.D. (1999). Large receptor reserve for cannabinoid actions in the central nervous system. J. Pharmacol Exper. Therap. 288:478-483.

Gifford A.N., Bruneus, M., Gatley, S.J. and N.D. Volkow (2000). Cannabinoid receptor-mediated inhibition of acetylcholine release from hippocampal and cortical synaptosomes. Br. J. Pharmacol. 131:645-50.

Graham, J.B., N.M. Aguilar, R. Dudley and C. Gans (1997). Late Paleozoic atmosphere and the ecological and evolutionary physiology of tetrapods. Pp.141-167, In: Amniote Origins: completing the transition to land. Sumida, S.S. and Martin, K.L.M. (eds). Academic Press, San Diego.

Graham, J.B., R. Dudley, N.M. Aguilar, and C. Gans (1995). Late Paleozoic pulse of atmospheric oxygen: possible implications for physiology and evolution. Nature 375:117-120.

Haeuber, E., Shaughnessy, M., Forrester, L.W., Coleman, K.L. and R.F. Macko (2004). Accelerometer monitoring of home- and community-based ambulatory activity after stroke. Arch. Phys. Med. Rehabil. 85:1997-2001.

Haga, Y., Dominique III, V. and S. Du (2009). Analyzing notochord segmentation and intervertebral disc formation using the twhh:gfp transgenic zebrafish model. Transg. Res. 18: 669-683.

Holsman, K.K., P.S. McDonald, P.A. Barreyro, D.A. Armstrong. (2010). Restoration through eradication? Removal of an invasive bioengineer restores some habitat function for a native predator. Ecol. Applic. 20: 2249–2262.

Hu, C., J. Cannizzaro, K.L. Carder, Z. Lee, F.E. Muller-Karger and I. Soto (In press). Red tide detection in the eastern Gulf of Mexico using MODIS imagery. In: Handbook of Satellite Remote Sensing Image Interpretation: Marine Applications.

Ishimatsu, A., N.M. Aguilar, K. Ogawa, Y. Hishida, T. Takeda, S. Oikawa, T. Kanda and K.K. Huat (1999). Arterial blood gas levels and cardiovascular function during varying environmental conditions in a mudskipper, Periophthalmodon schlosseri. J. Exp. Biol. 202:1753-1762.

Ithier-Guzman, W. and Pyrtle A.J. (2005). Determining the presence of anthropogenic radionuclides in Puerto Rico: preliminary results. OCEANS, 2005. Proc. MTS/IEEE 2:1104-1109.

Ithier-Guzman, W. and A.J. Pyrtle (2004). Sources and fate of anthropogenic radionuclides in Puerto Rico: an overview. Env. Monit. Rest. 3: 55-63

Juh, A.R., Velazquez, V. and M.I. Latz (2000). Effect of growth conditions on flow-induced inhibition of population growth of a red-tide dinoflagellate. Limnol. Oceanogr. 45:905-915.

Kaneshiro-Pineiro M.Y. (2009). Academic Listening and Note Taking: DNA and the Human Life Span. In Y. Kanaoka, Y. (Ed.), Academic listening encounters: the natural world: listening, note taking, discussion "low intermediate," (pp. 14-27). Cambridge Press

Kroeker, K.J., R.L. Kordas, R.N. Crim and G. Singh (2010). Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms. Ecol. Let. 13: 1419-1434.

Kwak, E., N. Gerald, D.A. Larochelle, K.K. Vithalani, M.L. Niswonger, M. Maready and A. De Lozanne (1999). LvsA, a protein related to the mouse beige protein, is required for cytokinesis in Dictyostelium. Mol. Biol. Cell. 10: 4429-4439.

Larned, S., Charles, C. and N. Puniwai, (2001). Detrital fruit processing in a Hawaiian stream ecosystem. Biotropica. 33: 241-248.

Larochelle D.A., N. Gerald and A. De Lozanne (2000). Molecular analysis of racE function in Dictyostelium. Microsc. Res. Tech. 49: 145-151.

Mahajan, B., Selvapandiyan, A., Gerald, N.J., V. Majam, H. Zheng, T. Wickramarachchi, J. Tiwari, H. Fujioka, J.K. Moch, N. Kumar, L.Aravind, H.L. Nakhasi and S. Kumar (2008). Centrins, Cell cycle regulation proteins in human malaria parasite Plasmodium falciparum. J. Biol. Chem. 283: 31871-32033.

Marotta, D.E., Gerald, N.J. and Dwyer, D.M. (2006). Rab5b localization to early endosomes in the protozoan human pathogen Leishmania donovani. Molec. Cell. Biochem. 292: 107-117.

Muller-Parker, G., J. Pierce-Cravens and B.L. Bingham (2007). Wide thermal tolerance of the symbiotic dinoflagellate Symbiodinium muscatinei (Dinophyta) in the sea anemone Anthopleura elegantissima (Cnidaria) from northern latitudes. J. Phycol. 43: 25-31.

Oakley, M.S., N.J. Gerald, T.F. McCutchan, L. Aravind and S. Kumar (2011). Clinical and molecular aspects of malaria fever. TREPAR 1062: 1-8.

Oakley, M.S., V. Majam, B. Mahajan, N. Gerald, V. Anantharaman, J.M. Ward, L.J. Faucette, T.F. McCutchan, H. Zheng, M. Terabe, J.A. Berzofsky, L. Aravind, S. Kumar (2009). Pathogenic roles of CD14, galectin-3, and OX40 during experimental cerebral malaria in mice. PLoS One, 4: e6793

Okunseri, C., Bajorunaite, R., Matthew, R. and Iacopino, A.M. (2007). Racial and ethnic variation in the provision of dental procedures. J. Publ. Hlth. Dent. 67: 20-27.

Onarae V. R., A.V. Grande, N. Dehktyar, M. Bruneus, J.K. Robinson, S.J. Gatley (2009). Long-term effects of irradiation with iron-56 particles on the nigrostriatal dopamine system. Rad. Env. Bioph. 48: 215-25.

Pennings, S.C., S.R. Pablo, V.J. Paul, and J.E. Duffy (1994). Effects of sponge secondary metabolites in different diets on feeding by three groups of consumers. J. Exp. Mar. Biol. Ecol. 180: 137-149.

Pennings, S.C., E. Selig, L. Houser and M.D. Bertness (2003). Geographic variation in positive and negative interactions among salt marsh plants. Ecology 84: 1527-1538.

Pennings, S.C., S.R. Pablo and V.J. Paul (1997). Chemical defenses of the tropical, benthic marine cyanobacterium Hormothamnion enteromorphoides: diverse consumers and synergisms. Limn. Oceanogr. 42: 911-917.

Porter-Kelley, J.M., Gerald, N.J., Engel, J.C., Ghedin, E., and D.M. Dwyer (2004). LdARF1 in trafficking and structural maintenance of the trans-golgi cisternal network in the protozoan pathogen Leishmania donovani. Traffic 5:1-16.

Reitzel, A.M., J. Webb, and S.M. Arellano (2004). Growth, development and condition of Dendraster excentricus (Eschscholtz) larvae reared on natural and laboratory diets. J. Plankt. Res. 26: 901-908.

Reuter, K.E., K.E. Lotterhos, R.N. Crim, C.A.Thompson and C.D.G. Harley (2010). Elevated pCO2 increases sperm limitation and risk of polyspermy in the red sea urchin Stronglylocentrotus franciscanus. Glob. Chg. Biol. Doi: 10.1111/j.1365-2486

Rivero-Calle, S., Armstrong, A., and F.J. Soto-Santiago (2008). Biological and physical characteristics of a mesophotic coral reef: Black Jack reef, Vieques, Puerto Rico. Proc. 11th Int. Coral Reef Symp. 1: 574-578.

Rosario, K., S.L. Iverson, D.A. Henderson, S. Chartrand, C. McKeon, E.P. Glenn and R.M. Maier (2007). Bacterial community changes during plant establishment at the San Pedro River mine tailings site. J. Env. Qual. 36: 1249-1259.

Rosario, K., C. Nilsson, Y. W. Lim, Y. Ruan, and M. Breitbart (2009). Metagenomic analysis of viruses in reclaimed water. Env. Micro. 11: 2806-2820.

Rosario, K., E. Symonds, C. Sinigalliano, J. Stewart, and M. Breitbart (2009). Pepper mild mottle virus as an indicator of fecal pollution. Appl. Env. Micro. 75: 7261-7267.

Rosario, K., S. Duffy, and M. Breitbart (2009). Diversity of circovirus-like genome architectures revealed by environmental metagenomics. J. Gen. Virol. 90: 2418 - 2424.

Ryer, C.H., A. Lawton, R.J. Lopez and L.O. Bori (2002). A comparison of the functional ecology of visual vs. nonvisual foraging in two planktivorous marine fishes. Can. J. Fish. Aquat. Sci. 59:1305-1314.

Sanders, I.M., J.C. Barrios-Santiago and R.S. Appeldoorn (2005). Distribution and relative abundance of Humpback Whales off western Puerto Rico during 1995-1997. Caribb. J. Sci. 41: 101-107.

Secord, D. and L. Augustine (2000). Biogegraphy and microhabitat variation in temperate algal-invertebrate symbioses: zooxanthellae and zoochlorellae in two Pacific intertidal sea anemones, Anthopleura elegantissima and A. xanthogrammica. Invert. Biol. 119:139-146.

Soto, I., S. Andrefouet, C. Hu, F. E. Muller-Karger, C. C. Wall, J. Sheng and B. G. Hatcher (2009). Physical connectivity in the Mesoamerican Barrier Reef System inferred from 9 years of ocean color observations. Coral Reefs 28:415-425.

Stevenson, D.E. and R.E. Hibpshman (2010). Distribution and food habits of two similar species of Bothrocara (Perciformes: Zoarcidae) in the eastern Bering Sea. Environ. Biol. Fish 87: 251-262.

Strom, S.L. , G.W. Wolfe, J.L. Holmes, H.A. Stecher, C. Shimeneck, S. Lambert, and E. Moreno (2003). Chemical defense in the microplankton I: Feeding and growth rates of heterotrophic protists on the DMS-producing phytoplankter Emiliania huxleyi. Limn Oceanogr. 48: 217-229.

Sulkin, S.D., E. Mojica and G.L. McKeen (1996). Elevated summer temperature effects on megalopal and early juvenile development in the Dungeness crab, Cancer magister. Can. J. Fish. Aquat. Sci. 53: 2076-2079.

Sulkin, S.D., A. Blanco, J. Chan and M. Bryant (1998). The effects of limited access to prey on the development of the first zoeal stage of the brachyuran crabs, Cancer magister and Hemigrapsus oregonensis. Mar. Biol. 131: 515-521.

Sulkin, S.D., S. Hinz, and M. Rodriguez (2003). Effects of exposure to toxic and non-toxic dinoflagellates on oxygen consumption and locomotion in stage 1 larvae of the crabs Cancer oregonensis and C. magister. Mar. Biol. 142: 205-211.

Sulkin, S., J., Lehto, S., Strom, and D. Hutchinson (1998). The nutritional role of protists in the first stage larvae of the Dungeness crab, Cancer magister. Mar. Ecol. Prog. Ser. 169: 237-242.

Tyler, P.A., C.M. Young, E. Dolan, S.M. Arellano, S.D. Brooke, and M. Baker (2006). Gametogenic periodicity in the chemosynthetic cold-seep mussel Bathymodiolus childressi. Mar. Biol. 150: 829-840.

Van Alstyne, K.L., V.J. Dominique III, and G. Muller-Parker (2008). Is dimethylsulfoniopropionate (DMSP) produced by the symbionts or the host in an anemone–zooxanthella symbiosis? Coral Reefs.

Van Alstyne, K.L. and L. Houser (2003). Dimethylsulfide release during macroinvertebrate grazing and its role as an activated chemical defense. Mar. Ecol. Prog. Ser. 250: 175-181.

Van Alstyne, K.L., Pelletreau, K.N. and K. Rosario (2003). The effects of salinity on DMSP production in the green alga Ulva fenestrata (Chlorophyta). Bot. Mar. 46: 350-356.

Van Gaest, A.L., Young, C.M., Young, J.J., Helms, A.R. and S.M. Arellano (2007). Physiological and behavioral responses of Bathynerita naticoidea (Gastropoda: Neritidae) and Methanoaricia dendrobranchiata (Polychaeta: Orbiniidae) to hypersaline conditions at a brine pool cold seep. Mar. Ecol. 28: 199-207.

Veloza, A.J., Chu, F.L.E. and K.W. Tang (2005). Trophic modification of essential fatty acids by heterotrophic protists and its effects on the fatty acid composition of the copepod Acartia tonsa. Mar. Biol. 148: 779-788.

Wong, Y.H., S.M. Arellano, H. Zhang, , T. Ravasi, and P-Y. Qian.. Dependency on de novo protein synthesis and proteomic changes during metamorphosis of the marine bryozoan Bugula neritina. Proteome Sci. 8: 25.

Yun, K., C. Hu, D. Lu, I. Soto and F.E. Muller-Karger (in press). Shoreline changes in the west-central Florida between 1987-2008 from Landsat observations. Int. J. Remote Sens.

Zhang, Y., J. Sun, K. Xiao, S.M. Arellano, V. Thiyagarajan, P-Y Qian. (2010). 2D gell0based multiplexed proteomic analysis during larval development and metamorphosis of the biofouling polychaete tubework Hydroides elegans. J. Proteome Res. 9:4851-4860.

Zhang, H., Y.H. Wong, H.Wang, Z. Chen, S.M. Arellano, T. Ravasi, P-Y Qian. In press. Quantitative proteomics identify molecular targets that are crucial in larval settlement and metamorphosis of Bugula neritina. J. Proteome Res.

Zhang, Y, X. Xu, S.M. Arellano, K. Xiao, P-Y Qian (2010). Comparative proteome and phosphoproteome analyses during cyprid development of the barnacle Balanus (= Amphibalanus) amphitrite. J Proteome Res. 9: 3146-3157.


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Page Updated 11.27.2012