Publications (2014-2018)

2014 Publications

Apple J, Lemus J, Semken S (2014) Teaching geoscience in the context of culture and place. J Geosci Ed 62: 1-4

Arellano SM, Van Gaest AL, Johnson SB, Vrijenhoek RC, Young CM (2014) Larvae from deep-sea methane seeps disperse in surface waters. Proc Royal Soc B 281: 20133276

Bingham BL, Dimond JL, Muller-Parker G (2014) Symbiont presence and identity influence life history strategies of a temperate sea anemone. Proc Royal Soc B 281: 2014.0548

Cheriton OM, McPhee‐Shaw EE, Shaw WJ, Stanton TP, Bellingham JG, Storlazzi CD (2014a) Suspended particulate layers and internal waves over the southern Monterey Bay continental shelf: An important control on shelf mud belts? J Geophys Res Oceans 119: 428-444

Cheriton OM, McPhee‐Shaw EE, Storlazzi CD, Rosenberger KJ, Shaw WJ, Raanan BY (2014b) Upwelling rebound, ephemeral secondary pycnoclines, and the creation of a near‐bottom wave guide over the Monterey Bay continental shelf. Geophys Res Lett 41: 8503-8511

Echevarria ML, Wolfe GV, Strom SL, Taylor AR (2014) Connecting alveolate cell biology with trophic ecology in the marine plankton using the ciliate Favella as a model. FEMS Microbiol Ecol 90: 18-38

Gentekaki E, Kolisko M, Boscaro V, Bright K, Dini F, Di Giuseppe G, Gong Y, Miceli C, Modeo L, Molestina R (2014) Large-scale phylogenomic analysis reveals the phylogenetic position of the problematic taxon Protocruzia and unravels the deep phylogenetic affinities of the ciliate lineages. Mol Phylogenet Evol 78: 36-42

Hewson I, Button JB, Gudenkauf BM, Miner B, Newton AL, Gaydos JK, Wynne J, Groves CL, Hendler G, Murray M (2014) Densovirus associated with sea-star wasting disease and mass mortality. Proc Nat Acad Sci 111: 17278-17283

Lee SH, Ko HS (2014) Larval stages of Romaleon gibbosulum and Metacarcinus magister (Crustacea: Decapoda: Cancridae) described from laboratory reared materials. Proc Biol Soc Washington 127: 157-174

Milisenda G, Rosa S, Fuentes VL, Boero F, Guglielmo L, Purcell JE, Piraino S (2014) Jellyfish as prey: frequency of predation and selective foraging of Boops boops (Vertebrata, Actinopterygii) on the mauve stinger Pelagia noctiluca (Cnidaria, Scyphozoa). PLoS ONE 9: e94600

Purcell JE, Decker MB, Breitburg DL, Broughton KJ (2014a) Fine-scale vertical distributions of Mnemiopsis leidyi ctenophores: predation on copepods relative to stratification and hypoxia. Mar Ecol Prog Ser 500: 103-120

Purcell JE, Tilves U, Fuentes VL, Milisenda G, Olariaga A, Sabatés A (2014b) Digestion times and predation potentials of Pelagia noctiluca eating fish larvae and copepods in the NW Mediterranean Sea. Mar Ecol Prog Ser 510: 201-213

Siu N, Apple JK, Moyer CL (2014) The effects of ocean acidity and elevated temperature on bacterioplankton community structure and metabolism. Open J Ecol 2014

Van Alstyne KL, Harvey EL, Cataldo M (2014) Effects of dopamine, a compound released by the green tide macroalga Ulvaria obscura, on marine algae and invertebrate larvae and juveniles. Phycologia 53: 195-202

Van Alstyne KL, Olson TK (2014) Estimating variation in surface emissivities of intertidal macroalgae using an infrared thermometer and the effects on temperature measurements. Mar Biol 161: 1409-1418

 

2015 Publications

Benedetti-Cecchi L, Canepa A, Fuentes V, Tamburello L, Purcell JE, Piraino S, Roberts J, Boero F, Halpin P (2015) Deterministic factors overwhelm stochastic environmental fluctuations as drivers of jellyfish outbreaks. PloS ONE 10: e0141060

Guidone M, Thornber CS, Van Alstyne KL (2015) Herbivore impacts on two morphologically similar bloom-forming Ulva species in a eutrophic bay. Hydrobiologia 753: 175-188

Harvey EL, Bidle KD, Johnson MD (2015a) Consequences of strain variability and calcification in Emiliania huxleyi on microzooplankton grazing. J Plankton Res 37: 1137-1148

Harvey EL, Menden-Deuer S, Rynearson TA (2015b) Persistent intra-specific variation in genetic and behavioral traits in the Raphidophyte, Heterosigma akashiwo. Front Microbiol 6

Noever C, Keiler J, Glenner H (2015) First 3D reconstruction of the rhizocephalan root system using MicroCT. J Sea Res

Pascual M, Fuentes V, Canepa A, Atienza D, Gili JM, Purcell JE (2015) Temperature effects on asexual reproduction of the scyphozoan Aurelia aurita sl: differences between exotic (Baltic and Red seas) and native (Mediterranean Sea) populations. Mar Ecol 36: 994-1002

Penaluna BE, Bodensteiner LR (2015) North Pacific Spiny Dogfish (Squalus suckleyi) presence in eelgrass habitat in the Salish Sea, Washington. NW Natural 96: 222-226

Purcell JE, Milisenda G, Rizzo A, Carrion SA, Zampardi S, Airoldi S, Zagami G, Guglielmo L, Boero F, Doyle TK (2015) Digestion and predation rates of zooplankton by the pleustonic hydrozoan Velella velella and widespread blooms in 2013 and 2014. J Plankton Res 37: 1056-1067

Ruesink JL, Yang S, Trimble AC (2015) Variability in carbon availability and eelgrass (Zostera marina) biometrics along an estuarine gradient in Willapa Bay, WA, USA. Estuar Coasts 38: 1908-1917

Sevadjian JC, McPhee‐Shaw EE, Raanan BY, Cheriton OM, Storlazzi CD (2015) Vertical convergence of resuspended sediment and subducted phytoplankton to a persistent detached layer over the southern shelf of Monterey Bay, California. J Geophys Res Oceans 120: 3462-3483

Strom SL, Fredrickson KA, Bright KJ (2015) Spring phytoplankton in the eastern coastal Gulf of Alaska: photosynthesis and production during high and low bloom years. Deep Sea Res II

Sun M, Dong J, Purcell JE, Li Y, Duan Y, Wang A, Wang B (2015) Testing the influence of previous-year temperature and food supply on development of Nemopilema nomurai blooms. Hydrobiologia 754: 85-96

Van Alstyne KL, Gifford S-A, Dohman JM, Savedo MM (2015a) Effects of environmental changes, tissue types and reproduction on the emissions of dimethyl sulfide from seaweeds that form green tides. Environ Chem 13: 220-230

Van Alstyne KL, Nelson TA, Ridgway RL (2015b) Environmental chemistry and chemical ecology of “green tide” seaweed blooms. Int Comp Biol 55: 518-532

 

2016 Publications

Boersma M, Mathew KA, Niehoff B, Schoo KL, Franco-Santos RM, Meunier CL (2016)  Temperature driven changes in the diet preference of omnivorous copepods: no more meat when it's hot?  Ecol Lett 19:45-53.

Graff JR, Menden-Deuer S (2016) Physical and optical properties of phytoplankton-rich layers in a coastal fjord: a step toward prediction and strategic sampling of plankton patchiness. Mar Ecol Prog Ser 544: 1-14

Groner ML, Burge CA, Kim CJ, Rees E, Van Alstyne KL, Yang S, Wyllie-Echeverria S, Harvell CD (2016) Plant characteristics associated with widespread variation in eelgrass wasting disease. Diseases Aquat Org 118: 159-168

Kohl W, McClure T, Miner B (2016) Decreased temperature facilitates short-term sea star wasting disease survival in the keystone intertidal sea star Pisaster ochraceus. PLoS ONE 11: e0153670

McLaskey AK, Keister JE, McElhany P, Olson MB, Busch DS, Maher M, Winans AK (2016) Development of Euphausia pacifica (krill) larvae is impaired under pCO2 levels currently observed in the Northeast Pacific. Mar Ecol Prog Ser 555: 65-78

Quesada A, KL S, Bingham B (2016a) Effect of symbiotic state on the fatty acid composition of Anthopleura elegantissima. Mar Ecol Prog Ser 545: 175-187

Quesada AJ, Acuña FH, Cortés J (2016b) First record of the sea anemone Anthopleura mariscali outside the Galápagos Archipelago. Mar Biodivers: 1-4

Stabeno P, Bond N, Kachel N, Ladd C, Mordy C, Strom S (2016) Southeast Alaskan shelf from southern tip of Baranof Island to Kayak Island: currents, mixing and chlorophyll-a. Deep Sea Res II

Strom SL, Fredrickson KA, Bright KJ (2016) Spring phytoplankton in the eastern coastal Gulf of Alaska: photosynthesis and production during high and low bloom years. Deep Sea Res. II 132: 107-121.

Van Alstyne KL (2016) Seasonal changes in nutrient limitation and nitrate sources in the green macroalga Ulva lactuca at sites with and without green tides in a northeastern Pacific embayment. Mar Poll Bull 103: 186-194

Van Alstyne KL, Gifford S-A, Dohman JM, Savedo MM (2016) Effects of environmental changes, tissue types and reproduction on the emissions of dimethyl sulfide from seaweeds that form green tides. Environ Chem 13: 220-230

Yang S, HilleRisLambers J, Ruesink J (2016) Reversal of intraspecific interactions by an ecosystem engineer leads to variable seedling success along a stress gradient. Mar Ecol Prog Ser 543: 163-171

 

2017 Publications

Dimond, J.L., J. Oppenheimer, S. Orechovesky, J. Rodríguez Ramos and B.L. Bingham (2017). Photophysiology and hydrogen peroxide generation of the dinoflagellate and chlorophyte symbionts of the sea anemone Anthopleura elegantissima. J. Exp. Mar. Biol. Ecol. 489: 43-47.

Dimond JL, Gamblewood SK§, Roberts SB (2017) Genetic and epigenetic insight into morphospecies in a reef coral. Molecular Ecology

Dobkowski KA, Kobelt J, Breton S, Van Alstyne KL (2017) Picky Pugettia: a tale of two kelps. Marine Biology, 164: 210

Hager K. W. , H. Fullerton, D. A. Butterfield, and C. L. Moyer. 2017. Community structure of lithotrophically-driven microbial mats from the Mariana Arc and back-arc. Front. Microbiol. 8:1578. doi:10.3389/fmicb.2017.01578 

Fullerton, H., K. W. Hager, S. M. McAllister, and C. L. Moyer. 2017. Hidden diversity revealed by genome-resolved metagenomics of iron-oxidizing microbial mats from Lō’ihi Seamount, Hawai’i. ISME J. 11:1900-1914. doi:10.1038/ismej.2017.40 

Janouškovec, J., G.S. Gavelis, F. Burki, D. Dinh, T.R. Bachvaroff, S.G. Gornik, K.J. Bright, B. Imanian, S.L. Strom, C.F. Delwiche, R.F Waller, R.A. Fensome, B.S. Leander, F. Rohwer, J.F. Saldarriaga. Major transitions in dinoflagellate evolution and functions unveiled by phylotranscriptomics. In press, Proceedings of the National Academy of Sciences.

Kodner, R.B., Clement, T., Asamoto, C., Nazario, S, Lekanoff, R., Nodestine, S., McLaughlin, R., Hervol, E. ,  Apple, J, and Hatch, M.  In review.  Phylogenetic-based temporal patterns of microbial eukaryote community structure and diversity in a dynamic bay. Molecular Ecology. 

Macrander, J.C., J.L. Dimond, B.L. Bingham and A.M. Reitzel (2017). Transcriptome sequencing and characterization of Symbiodinium muscatinei and Elliptochloris marina, symbionts found within the aggregating sea anemone Anthopleura elegantissima. Mar. Genom. http://dx.doi.org/10.1016/j.margen.2017.08.010

Olson, M.B., T. Wuori, B.A. Love, S.L. Strom. Ocean acidification effects on haploid and diploid Emiliania huxleyi strains: why changes in cell size matter. In press, Journal of Experimental Marine Biology and Ecology.

Rivera Vázquez, Y., K.L. Van Alstyne and B.L. Bingham (2017). Exudates of the green alga Ulvaria obscura (Kützing) affect larval development of the sand dollar Dendraster excentricus (Eschscholtz) and the Pacific oyster Crassostrea gigas (Thunberg). Mar. Biol. 164: 194 - 204.

Strom, S.L., K.J. Bright, K.A. Fredrickson, B. Brahamsha. The Synechococcus cell surface protein SwmA increases vulnerability to predation by flagellates and ciliates. In press, Limnology and Oceanography (early on-line version available).

Strom, S.L., K.A. Fredrickson, K.J. Bright. Microzooplankton in the coastal Gulf of Alaska: regional, seasonal and interannual variations. In press, Deep-Sea Research II.

van Hees DH, Olsen YS, Wernberg T, Van Alstyne KL, Kendrick G  (2017) Phenolic concentrations of seaweeds and relationships to nearshore environmental gradients.  Marine Biology, 164: 74 DOI: 10.1007/s00227-017-3115-z)

2018 Publications

Groner ML, Burge CA, Cox R, Rivlin N, Turner M, Van Alstyne KL, Wyllie-Echeverria S, Bucci J, Staudigel P, Friedman CS.  (2018) Oysters and eelgrass: potential partners in a high pCO2 ocean.  Ecology, 99: 1802-1814.

LaPointe BE, Burkholder JM, Van Alstyne KL (2018) Macroalgal blooms in a changing world: causes, impacts, and management. In: Shumway S (ed.) Harmful algal blooms: a compendium desk reference, Wiley-Blackwell, pp. 515-560.

Macrander JC, Dimond JL, Bingham BL, Reitzel AM. (2018) Transcriptome sequencing and characterization of Symbiodinium muscatinei and Elliptochloris marina, symbionts found within the aggregating sea anemone Anthopleura elegantissima. Mar. Genom. 37:82-91.

Strom SL, Bright KJ, Fredrickson KA, Cooney EC. (2018) Phytoplankton defenses: Do Emiliania huxleyi coccoliths protect against microzooplankton predators?. Limnol. Oceanogr. 63:617-27.

Simpson AG, Tripp L, Shull DH, Yang S (2018) Effects of Zostera marina rhizosphere and leaf detritus on the concentration and distribution of pore-water sulfide in marine sediments. Estuar. Coastal Shelf Sci. 

Olson MB, Solem K, Love B. (2018) Microzooplankton grazing responds to simulated ocean acidification indirectly through changes in prey cellular characteristics. Mar. Ecol. Prog. Ser. 604:83-97.

Van Alstyne KL (2018) Seawater nitrogen concentration and light independently alter performance, growth, and resource allocation in the bloom-forming seaweeds Ulva lactuca and Ulvaria obscura (Chlorophyta).  Harmful Algae, 78: 27-35.

Van Alstyne, KL, Padilla DK (2018) Chemical ecology of seagrasses. In: Chemical Ecology:  The Ecological Impacts of Marine Natural Product (eds: Puglisi MP, Becerro MA), CRC Press, Boca Raton FL, pp. 165-192. 

Van Alstyne KL, Ridgway RL, Nelson TA (2018) Neurotransmitters in marine and freshwater algae. In: Ramakrishna A, Roshchina VV (eds.) Neurotransmitters in plants: possible physiological functions, 2nd Edition, CRC Press, Boca Raton FL, pp. 35-54.